Using our pipeline requires the use of [Batch Context](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context) which combines the use of user configuration and job configuration. You will see there are 4 options under File > Batch in your eeglab window that are pertinent to Batch Context. You can learn more about the [different interfaces of Batch Context here.](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/functions)
This page describes the settings related to the user configuration in Context configuration and use with the pipeline. Explanation of Context configuration itself is available [on the Batch Context wiki](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files#context-configuration-files-cfg)
Navigate to File > Context configuration
# Required changes
For our purposes we will only discuss the changes from the provided configuration file required.
Click "Load context config" in the top left of your window. Navigate to analysis/support/config and select `contextconfig.cfg`. Pressing "Refresh" in the Context configuration will also load your system commands if you desire to use those.
We can provide only limited support for these options as they are environment specific and require knowledge from your system administrators.
The options we will be changing are as follows:
This should be your username on the remote cluster
ssh host name, this should be a fully qualified host name or a host name that can be resolved by the system as your cluster host name.
Tip: `.ssh/config` applies here so aliases built into the ssh config file can be used instead of full host names this applies to all of the remote paths
This is the directory on a remote server we use for archiving data files, this not necessary for the pipeline to function properly but is used with some of the system commands.
This is the directory the contains your data files and all other project files that were remotely copied to the server in the install steps.
This field should be equal to the value of remote_project_work followed by `/analysis/support/dependencies`
Press Save as and save the new context configuration as "mycontextconfig.cfg" in your analysis/support/config directory