The Lossless Pipeline

Please note that the Wiki is currently under construction. For any questions please contact us.

This repository consists of the BIDS Lossless EEG pipeline package that contains everything you need to get started processing large scale EEG data.

The following can be found through links below:

• A fully documented tutorial taking source data from a Biosemi system through each stage of the pipeline
• Complete list of all parameters and their uses
• The motivation and interpretation of the steps of the pipeline
• Overviews of the various diagnostic systems in place
• External links for plugins used

The Wiki adheres to the following style:

• Commands that are to be run in either Matlab or the terminal are to be in code blocks (See example below)
• Names of scripts or directories are to be emphasized as such: hello-world.m or derivatives/lossless/code
• Bold will be used for emphasis and menu navigation, such as: File -> Vised Configuration

Example code block:

EEG = eeg_checkset(EEG);

Navigation

The Face13 Tutorial

• Source to raw: EEG init and BIDS-ifying
  • Assumptions and Dependencies
  • Downloading the Sample
  • Init Scripts
  • BIDS-ifying
  • Staging
• Raw to lossless: Running the pipeline
  • Opening EEGLAB
  • Setup Context Config
  • Configuring the Remote
  • Running Your First Job
• Lossless to QC: Quality control and more!
  • QC Init
  • QC Procedure
  • Diagnostics - UNDER CONSTRUCTION

Lossless Pipeline

• Updates via Git
• Directories and Structure
• Pipeline Scripts
• Tuning Cluster Configs

External References and Legacy Help

• BIDS Format
• AMICA
• ICLabel
• EEGLAB
• Contact us
• ESS and Raw File Initialization

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