Commits · f0260b0eaf3aa35a1fc499a12b9ea15df0e1cfa3 · Armin Sobhani / bioseq · GitLab

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Jul 17, 2018
- add benchmark for random_sequence for boost.compute · f0260b0e
  Armin Sobhani authored 7 years ago
  
  f0260b0e
Jul 13, 2018
- add system to boost libraries for test cases · 63da0b10
  Armin Sobhani authored 7 years ago
  
  63da0b10
- fix problem with boost.compute unit test · 9e63c593
  Armin Sobhani authored 7 years ago
  
  9e63c593
- add support for making boost.compute test to cmake · d57cba45
  Armin Sobhani authored 7 years ago
  
  d57cba45
- add peak memory (MaxRSS) report to benchmarks · c6ca8862
  Armin Sobhani authored 7 years ago
  
  c6ca8862
- add performance rate report to benchmarks · c3ec6b1e
  Armin Sobhani authored 7 years ago
  
  c3ec6b1e
Jul 12, 2018
- add some benchmarking to perf folder · d465af46
  Armin Sobhani authored 7 years ago
  
  d465af46
Jul 11, 2018
- add commented variatons to random sequence generation snippet · 7f6c7165
  Armin Sobhani authored 7 years ago
  
  7f6c7165
- add commented random sequence generation snippet to test_io_fasta · b35dad69
  Armin Sobhani authored 7 years ago
  
  b35dad69
- add charsperline ouput stream manipulator for fasta file format · 2ce82044
  Armin Sobhani authored 7 years ago
  
  2ce82044
- add fasta file format output capability with unit tests · 8b809e84
  Armin Sobhani authored 7 years ago
  
  8b809e84
Jul 10, 2018
- add long_name() to sequence_host with unit tests · bbf0119b
  Armin Sobhani authored 7 years ago
  
  bbf0119b
- add short_name() to sequence_host with unit tests · 4a55aca2
  Armin Sobhani authored 7 years ago
  
  4a55aca2
- change character literals to ascii hex codes in fasta.hpp · 2641deb0
  Armin Sobhani authored 7 years ago
  
  2641deb0
Jul 09, 2018
- add support for reading descriptions to fasta file format · a0908583
  Armin Sobhani authored 7 years ago
  
  a0908583
- add description_component and unit tests · f0753f40
  Armin Sobhani authored 7 years ago
  
  f0753f40
Jul 06, 2018
- fix extra whitespaces introduced to test/data/reads.fa by the previous commit · b922fe69
  Armin Sobhani authored 7 years ago
  
  b922fe69
- change fasta file format to use boost::trim_right() to have a better tolerance for whitespaces · c6fcbdc7
  Armin Sobhani authored 7 years ago
  
  c6fcbdc7
- add unit tests for the name_component · 7a6961eb
  Armin Sobhani authored 7 years ago
  
  7a6961eb
Jul 05, 2018
- add move constructor for sequence_host class with unit tests · 87948716
  Armin Sobhani authored 7 years ago
  
  87948716
- update unit test for multi-fasta file · 6a96c61a
  Armin Sobhani authored 7 years ago
  
  6a96c61a
- add two more reads to reads.fa and change maximum number of nucleotides per line to 70 · 9fab6996
  Armin Sobhani authored 7 years ago
  
  9fab6996
- add copy constructor for sequence_host class with unit tests · 79fa8658
  Armin Sobhani authored 7 years ago
  
  79fa8658
Jun 29, 2018
- fix benchmark to correctly complement the sequence · 9c57dfaa
  Armin Sobhani authored 7 years ago
  
  9c57dfaa
- benchmark commit 2 · c2828254
  Armin Sobhani authored 7 years ago
  
  c2828254
- benchmark commit · 6b64da40
  Armin Sobhani authored 7 years ago
  
  6b64da40
Jun 28, 2018
- add commented sample for partial reverse complement of a sequence · 03bc5707
  Armin Sobhani authored 7 years ago
  
  03bc5707
- add some commented boost range code snippets · ddaa97bb
  Armin Sobhani authored 7 years ago
  
  ddaa97bb
- fix problem with reading multi-fasta files · 7eacf2bc
  Armin Sobhani authored 7 years ago
  
  7eacf2bc
- add test for multi-fasta file · b564c4f9
  Armin Sobhani authored 7 years ago
  
  b564c4f9
Jun 27, 2018
- revert test/CMakeLists.txt to previous commit for ARM platforms · afa28349
  Armin Sobhani authored 7 years ago
  
  afa28349
Jun 26, 2018
- fix warnings for gcc < 7 · d9bf404e
  Armin Sobhani authored 7 years ago
  
  d9bf404e
- add feature for reading the name of the sequence to fasta file format · d63fad40
  Armin Sobhani authored 7 years ago
  
  d63fad40
Jun 25, 2018
- change default reservation for fasta lines from 70 to 80 · 64929514
  Armin Sobhani authored 7 years ago
  
  64929514
- fix correct handling of CR/LF for files created in different platforms · 03ad9c55
  Armin Sobhani authored 7 years ago
  
  03ad9c55
Jun 22, 2018
- update fasta_format::do_scan() to read sequence portion of fasta file · 37ef59a2
  Armin Sobhani authored 7 years ago
  
  37ef59a2
- change .gitignore to ignore build folders started with build · 4e1f1720
  Armin Sobhani authored 7 years ago
  
  4e1f1720
- add test for vector container to test_io_fasta · 9c86b440
  Armin Sobhani authored 7 years ago
  
  9c86b440
- use plain insert() function for both vector and string containers · ed835744
  Armin Sobhani authored 7 years ago
  
  ed835744
Jun 20, 2018
- change minimum required boost version from 1.54 to 1.53 · 79961a47
  Armin Sobhani authored 7 years ago
  
  79961a47