... | ... | @@ -27,28 +27,28 @@ Save |
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| Variable | Default in Config File | Description |
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| [in_path] | analysis/data/1_init | |
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| [recur_sec] | 1 | |
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| [limit_sec] | [0 1] | |
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| [sd_chan_z] | 2.326 | |
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| [sd_chan_p] | 0.1 | |
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| [sd_chan_trim] | 10 | |
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| [ref_loc_file] | analysis/support/misc/standard_1020_bucanl19.elc | |
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| [low_bound_hz] | 2 | |
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| [high_bound_hz] | 30 | |
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| [n_neighb_chan] | 3 | |
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| [r_chan_z] | 2.326 | |
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| [r_chan_p] | 0.1 | |
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| [r_chan_trim] | 10 | |
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| [bridge_trim] | 40 | |
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| [bridge_z] | 3 | |
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| [n_neighb_epoch] | 3 | |
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| [epoch_z] | 2.32 | |
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| [epoch_p] | 2 | |
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| [epoch_trim] | 20 | |
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| [out_path] | analysis/data/2_preproc | |
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| [amica_param_file] | analysis/support/misc/amica_default.param | |
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| [savediff] | NO | |
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| [in_path] | analysis/data/1_init | Relative path to input data files assuming cd = work_path |
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| [recur_sec] | 1 | Recurrence (sec) for artifact detection epoching |
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| [limit_sec] | [0 1] | Limits (sec) for artifact detection epoching |
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| [sd_chan_z] | 2.326 | z threshold for flagging channel during standard deviation criteria |
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| [sd_chan_p] | 0.1 | Percentage of flagged epochs required to flag a channel during standard |
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| [sd_chan_trim] | 10 | Percentage trim for confidence intervals during channel neighbour r criteria (10 = 5% top and bottom) |
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| [ref_loc_file] | analysis/support/misc/standard_1020_bucanl19.elc | ame of file containing the reference locations (including the relative path) |
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| [low_bound_hz] | 2 | Lower bound of the filter bass-band |
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| [high_bound_hz] | 30 | Upper bound of the filter bass-band |
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| [n_neighb_chan] | 3 | Number of channels to use in nearest neighbour r calculation (for channel criteria) |
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| [r_chan_z] | 2.326 | z threshold for flagging channel during neighbour r criteria |
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| [r_chan_p] | 0.1 | Percentage of flagged epochs required to flag a channel during neighbour r criteria |
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| [r_chan_trim] | 10 | Percentage trim for confidence intervals during channel neighbour r criteria (10 = 5% top and bottom) |
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| [bridge_trim] | 40 | Percentage trim for z calculation of bridged channels (e.g. 40 = 20% top and bottom) |
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| [bridge_z] | 3 | z threshold for flagging channel during bridging criteria |
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| [n_neighb_epoch] | 3 | Number of channels to use in nearest neighbour r calculation (for epoch criteria) |
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| [epoch_z] | 2.32 | z threshold for flagging epochs during neighbour r criteria |
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| [epoch_p] | 2 | Percentage of flagged channels required to flag an epoch during neighbour r criteria |
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| [epoch_trim] | 20 | Percentage trim for confidence intervals during epoch neighbour r criteria (10 = 5% top and bottom) |
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| [out_path] | analysis/data/2_preproc | Relative path to output data files assuming cd = work_path |
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| [amica_param_file] | analysis/support/misc/amica_default.param | template amicadefs.param file to modify |
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| [savediff] | NO | YES if you want to save the filter residuals |
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# Amica
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