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| [n_neighb_epoch] | 3 | Number of channels to use in nearest neighbour r calculation (for epoch criteria) |
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| [epoch_z] | 2.32 | z threshold for flagging epochs during neighbour r criteria |
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| [epoch_p] | 2 | Percentage of flagged channels required to flag an epoch during neighbour r criteria |
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| [epoch_trim] | 20 | Percentage trim for confidence intervals during epoch neighbour r criteria (10 = 5% top and bottom) |
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| [epoch_trim] | 20 | Percentage trim for confidence intervals during epoch neighbour r criteria (20 = 10% top and bottom) |
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| [out_path] | analysis/data/2_preproc | Relative path to output data files assuming cd = work_path |
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| [amica_param_file] | analysis/support/misc/amica_default.param | template amicadefs.param file to modify |
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| [savediff] | NO | YES if you want to save the filter residuals |
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| [savediff] | NO | YES if you want to save the filter residuals |
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# Amica
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... | ... | @@ -62,9 +62,9 @@ Versions |
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| Variable | Default in Config File | Description |
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|-------------|--------------------------------------------------------------|-------------|
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| [dep_path] | analysis/support/dependencies/eeglab_asr_amica/plugins/amica | |
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| [in_path] | analysis/data/2_preproc | |
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| [amica_ver] | amica15ub | |
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| [dep_path] | analysis/support/dependencies/eeglab_asr_amica/plugins/amica | Relative path to amica executable program assuming cd = work_path |
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| [in_path] | analysis/data/2_preproc | Relative path to input data files assuming cd = work_path |
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| [amica_ver] | amica15ub | Name of the amica executable program version |
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# Compart
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... | ... | @@ -75,35 +75,35 @@ Versions |
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| Variable | Default in Config | Description |
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|--------------------|-------------------------------------------|-------------|
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| [in_path] | analysis/data/2_preproc | |
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| [recur_sec] | 1 | |
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| [limit_sec] | [0 1] | |
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| [epoch_z] | 2.326 | |
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| [epoch_p] | 0.1 | |
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| [epoch_trim] | 20 | |
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| [out_path] | analysis/data/2_preproc | |
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| [amica_param_file] | analysis/support/misc/amica_default.param | |
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| [min_gap_ms] | 4000 | |
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| [in_path] | analysis/data/2_preproc | Path to input and output data files assuming cd = work_path |
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| [recur_sec] | 1 | Recurrence (sec) for artifact detection epoching |
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| [limit_sec] | [0 1] | Limits (sec) for artifact detection epoching |
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| [epoch_z] | 2.326 | z threshold for flagging channel during ic_sd criteria |
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| [epoch_p] | 0.1 | Percentage of flagged components required to flag an epoch during ic_sd criteria |
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| [epoch_trim] | 20 | Percentage trim for confidence intervals during channel neighbour r criteria (20 = 10% top and bottom) |
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| [out_path] | analysis/data/2_preproc | Relative path to output data files assuming cd = work_path |
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| [amica_param_file] | analysis/support/misc/amica_default.param | Template amicadefs.param file to modify. |
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| [min_gap_ms] | 4000 | Minimum time (ms) to allow between periods marked for rejection |
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# ASR
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| Variable | Default in Config File | Description |
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|--------------------|-------------------------------------------|-------------|
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| [in_path] | analysis/data/2_preproc | |
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| [out_path] | analysis/data/2_preproc | |
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| [amica_param_file] | analysis/support/misc/amica_default.param | |
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| [asr_sd_cutoff] | 20 | |
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| [asr_winlen] | [] | |
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| [asr_stepsize] | [] | |
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| [asr_maxdims] | [] | |
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| [asr_learningtime] | 60 | |
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| [asr_reftol] | [] | |
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| [asr_refwinlen] | [] | |
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| [asr_useGPU] | false | |
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| [min_gap_ms] | 4000 | |
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| [savediff] | NO | |
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| [critmean] | 0.8 | |
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| [asr_mem] | 5000 | |
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| [in_path] | analysis/data/2_preproc | Relative path to input data files assuming cd = work_path |
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| [out_path] | analysis/data/2_preproc | Relative path to output data files assuming cd = work_path |
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| [amica_param_file] | analysis/support/misc/amica_default.param | template amicadefs.param file to modify. |
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| [asr_sd_cutoff] | 20 | Any data over this standard deviation will be excluded |
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| [asr_winlen] | [] | Window length, does not normally need adjusting |
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| [asr_stepsize] | [] | Processing step size, does not normally need adjusting |
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| [asr_maxdims] | [] | Max matrix dimension reconstruction size faction or value (eg. 2/3), does not normally need adjusting |
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| [asr_learningtime] | 60 | How long of data ASR trains on in sec |
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| [asr_reftol] | [] | ASR reference tolerence by standard deviation (eg. [-3.5 5.5]) not needed as learning data is supplied |
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| [asr_refwinlen] | [] | Window length of references. (eg. 1), does not normally need adjusting |
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| [asr_useGPU] | false | Run on the GPU or not (true or false). |
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| [min_gap_ms] | 4000 | Minimum time (ms) to allow between periods marked for rejection |
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| [savediff] | NO | YES if you want to save the filter residuals |
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| [critmean] | 0.8 | Fraction of training points that need to be above the mean to be included in ASR training |
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| [asr_mem] | 5000 | Free memory allotted to asr in MB must be >256 (Default: 5000), for remote should be less then mpp allotted. |
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# Concat
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... | ... | @@ -114,14 +114,15 @@ Versions |
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| Variables | Default in Config | Description |
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|--------------|-------------------------|-------------|
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| [in_path] | analysis/data/2_preproc | |
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| [out_path] | analysis/data/2_preproc | |
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| [recur_sec] | 1 | |
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| [limit_sec] | [0 1] | |
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| [epoch_z] | 2.326 | |
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| [epoch_p] | 1 | |
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| [epoch_trim] | 20 | |
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| [min_gap_ms] | 4000 | |
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| [in_path] | analysis/data/2_preproc | Relative path to input data files assuming cd = work_path |
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| [out_path] | analysis/data/2_preproc | Relative path to output data files assuming cd = work_path |
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| [recur_sec] | 1 | Recurrence (sec) for the current artifact detection epoching |
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| [limit_sec] | [0 1] | Limits (sec) for the current artifact detection epoching |
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| [epoch_z] | 2.326 | z threshold for flagging channel during icsd criteria |
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| [epoch_p] | 0.1 | Percentage of flagged components required to flag an epoch during icsd criteria |
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| [epoch_trim] | 20 | Percentage trim for confidence intervals during channel neighbour r criteria (20 = 10% top and bottom) |
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| [min_gap_ms] | 4000 | Minimum time (ms) to allow between periods marked for rejection |
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# Dipfit (Local)
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... | ... | |