directories.md

 [[_TOC_]]
 # Directories
-All of the BUCANL pipelines follow the same directory system so that all of the scripts and configuration files can accurately load and save files.  
+All of the Brock University Cognitive and Affective Neuroscience Lab pipelines follow the same directory system so that all of the scripts and configuration files can accurately load and save files.  
 :so: After downloading the pipeline please rename the outermost folder *project_name* to the name of your project.  
 
 The next directories below the project name are analysis, remote_archive and remote work. Analysis contains the majority of the project information and remote_archive and remote_work contain are placeholder folders if you choose to [mount your remote work](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/remote-start-up#mounting-the-project).
@@ -10,7 +10,7 @@ The next directories below the project name are analysis, remote_archive and rem
 # Data  
  * **0_raw:** Your raw data files and individual location files will be placed here, they will have a extension such as .bdf. These files are loaded into the *init* script. If you are loading a level 0 ESS capsule then place the main project folder in this folder.  
 
- * **1_init:** Your data files will go here after they have been initialled and are have the .set/.fdt extension. If the files only have a .set part make sure your eeglab options are correct, and that you loaded the matlab.minit file in your configs.These files are loaded into the rest of the pipeline.  
+ * **1_init:** Your data files will go here after they have been initialized and are have the .set/.fdt extension. If the files only have a .set part make sure your eeglab options are correct, and that you loaded the matlab.minit file in your configs.These files are loaded into the rest of the pipeline.  
 
  * **2_preproc:**  All of the processed files created by the pipeline will be saved into this folder. The final file from the main pipeline is the *_comp* file. This file then goes into *dipfit* for the final local part.  These files are essentially backups so you can go look at the data during any stage of the processing you want.  
 
@@ -24,7 +24,7 @@ Log is automatically populated with scripts when you execute the pipeline. You w
 * A specific **.err** file for each subject if an error occurred.
 * A specific  **.log** file for each subject that records the remote system command window.    
 * A single **.sh** submit script that contains the job commands that were sent to the remote servers. (Remote Jobs Only)  
-When debuggin errors this is the most important folder as you can see what is happening by using these four files.  
+When debugging errors this is the most important folder as you can see what is happening by using these four files.  
 
 # Support
 **Config** This folder contains all of the configuration files and init files that are needed for the EEGLAB plugins. Configuration files will have a **.cfg** or **.txt** extension. The naming of the configuration files should mirror the script that they goes with.  
@@ -33,7 +33,7 @@ When debuggin errors this is the most important folder as you can see what is ha
 
 **Misc:** This folder contains a bunch of miscellaneous support pieces such amica parameter files, EEG location models, and event renaming files. 
 
-**Scripts:** This folder contains all of the [Script Files](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/pipeline-scripts) that make up process behind the pipeline. These have the extension **.htb** and are called **H**istory **B**atch **F**iles as they are executed in the *batch_context* extension.  
+**Scripts:** This folder contains all of the [Script Files](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/pipeline-scripts) that make up process behind the pipeline. These have the extension **.htb** and are called **H**istory **T**emplate **B**atch  as they are executed in the *batch_context* extension.  
   
 ***