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**3_check:** The pipeline does not automatically save any files into this folder, but it is useful to store files after they have been visually inspected and are ready for analysis.
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**4_study:** The pipeline does not automatically save any files into this folder, but it is useful to store files that are included in your study.
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# Logs
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Logs is automatically populated with scripts when you execute the pipeline. You will see a folder generated for every script identified by the script that was run followed by the date and time of the scripts execution. These folders contain:
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# Log
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Log is automatically populated with scripts when you execute the pipeline. You will see a folder generated for every script identified by the script that was run followed by the date and time of the scripts execution. These folders contain:
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* A specific **.m** file for each subject data file.
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* A specific **.err** file for each subject if an error occurred.
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* A specific **.log** file for each subject that records the remote system command window.
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# Support
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**Config** This folder contains all of the configuration files that are needed for the EEGLAB plugins. Configuration files will have a **.cfg** or **.txt** extension.
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**Dependencies/eeglabs** This folder will contain the correct [BUCANL EEGLAB](https://git.sharcnet.ca/bucanl_eeglab/eeglab_asr_amica) version to support this pipeline. You can check to see the exact version by following the instructions in [Version Control](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/updates-and-git-version-control).
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**Dependencies/eeglab:** This folder will contain the correct [BUCANL EEGLAB](https://git.sharcnet.ca/bucanl_eeglab/eeglab_asr_amica) version to support this pipeline. You can check to see the exact version by following the instructions in [Version Control](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/updates-and-git-version-control).
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**Misc** This folder contains a bunch of miscellaneous support pieces such amica parameter files, and EEG location models.
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**Misc:** This folder contains a bunch of miscellaneous support pieces such amica parameter files, and EEG location models.
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**Scripts** This folder contains all of the [Script Files](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/pipeline-scripts) that make up process behind the pipeline. These have the extension **.htb** and are called history Batch Files as they are executed with the *batch_context* extension.
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**Scripts:** This folder contains all of the [Script Files](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/pipeline-scripts) that make up process behind the pipeline. These have the extension **.htb** and are called history Batch Files as they are executed with the *batch_context* extension.
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It is important to note that the folder design is built into pipeline, and in order for it to run smoothly the directory structure should not be changed without carefully consulting each part of the pipeline design.
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[ :house: **Return to Main Page**](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/home) |
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