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adlofts created page: postprocessingscript authored by Andrew Lofts's avatar Andrew Lofts
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directories.md
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......@@ -8,7 +8,7 @@ The next directories below the project name are analysis, remote_archive and rem
![folders](/uploads/0ff4703fe808462d68c7d4f5749b004e/folders.png)
# Data
* **0_raw:** Your raw data files and individual location files will be placed here, they will have a extension such as .bdf. These files are loaded into your own *init* script or the StudyBuddy script. If you are loading a level 0 ESS capsule then place the main project folder in this folder.
* **0_raw:** Your raw data files and individual location files will be placed here, they will have a extension such as .bdf. These files are loaded into the *init* script. If you are loading a level 0 ESS capsule then place the main project folder in this folder.
* **1_init:** Your data files will go here after they have been initialled and are have the .set/.fdt extension. If the files only have a .set part make sure your eeglab options are correct, and that you loaded the matlab.minit file in your configs.These files are loaded into the rest of the pipeline.
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* A specific **.err** file for each subject if an error occurred.
* A specific **.log** file for each subject that records the remote system command window.
* A single **.sh** submit script that contains the job commands that were sent to the remote servers. (Remote Jobs Only)
When debuggin errors this is the most important folder as you can see what is happening by using these four files.
# Support
**Config** This folder contains all of the configuration files and init files that are needed for the EEGLAB plugins. Configuration files will have a **.cfg** or **.txt** extension.The naming of the configuration files should mirror the script that they goes with.
**Dependencies/eeglab:** This folder will contain the correct [BUCANL EEGLAB](https://git.sharcnet.ca/bucanl_eeglab/eeglab_asr_amica) version to support this pipeline. You can check to see the exact version by following the instructions in [Version Control](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/updates-and-git-version-control).
**Misc:** This folder contains a bunch of miscellaneous support pieces such amica parameter files, and EEG location models.
**Misc:** This folder contains a bunch of miscellaneous support pieces such amica parameter files, EEG location models, and event renaming files.
**Scripts:** This folder contains all of the [Script Files](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/pipeline-scripts) that make up process behind the pipeline. These have the extension **.htb** and are called **H**istory **B**atch **F**iles as they are executed in the *batch_context* extension.
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