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  • buffer_io
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  • new_buffer_io
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Created with Raphaël 2.2.030Jan12Mar14Nov529Sep28272524211918141312729Aug2423211792131Jul251918171312111096529Jun282726252220191514121187631May18add perf_stl_complement benchmarkmastermasteradd sequence_host benchmark using Google benchmarkbuffer_iobuffer_ioadd constructor for inserting count default-inserterd instances to sequence_host class for benchmarking reverse complement algorithmchange to use boost::container for sc examplenew_buffer_ionew_buffer_iofix a bug in fasta file format for sequences larger than 16K bufferadd correct handling of sequence name in cases cut by the end of buffer to fasta file formatchange fasta file format to store buffer rather than sequences for each invocationchange all unit tests and samples to be in conformance with new template interface for allocatorchange sequence interface to be compatible with boost::container::allocatorchange buffer size from 16K to 32K for fasta file formatfix some commented code in fasta file formatclean the code for fasta file formatfix compilation problem on Windowschange copy/move assignment operators to use base container class functionsadd range constructor to the sequence_host class, no unit test yetadd some array reservation to fasta for speedupchange fasta implementation using queue - not debugged fullyadd noexcept to sequence move assignmnet operatorfix compilation problem with std::ios_base::seekdir on some platformsadd mapped file sample to sc.cppadd constructor to create a sequence with count elementschange all _MSC_VER macros to _WIN32fix problem in building tests and benchmarksfix some problem under Windowsadd special handling of mapped file for fasta formatdo some housekeeping in sc.cppadd mapped_file samples to sc.cppuse of file_descriptor_source for reading from the standard input instead of std::cinadd code to sc example for reading gzip compressed fasta fileschange fasta file format to use stream buffersmake fasta reading of large files faster by a factor of twoadd more optimization to fasta readermake new fasta file format to work with files larger than 16Kfix -O3 warning on MSVCmake new fasta file format to work with files less than 16384 bytes. does not work with larger files yet.add sc exampleremove boost.compute samples by defaultadd perf_bc_reverse_complement.cppadd sub-range function overload to sequence_host class along with unit testschange unit test name from complement_overright to in_place_complement
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