The scripts have prefixes of s followed by the number of the pipeline step. We can select multiple steps of the pipeline by ctrl clicking.
Normally we don't need to run the whole pipeline we can just run half the pipeline so long as the data is reasonably clean.
**Full pipeline run**
Select 1-14, 16
Select 1-5, 7-11, 6
**Data side pipeline run**
Select 1-3, 7-9, 13, 16
Select 1-6
# Selecting the correct batch configuration files
The configuration files specify the execution function or scheduler used by the remote server. You must select the correct type of configuration files given your chosen remote host.
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@@ -63,9 +63,7 @@ Submission is done by pressing "Ok"
The Matlab Command Window will detail the process of submitting the job and display any errors the occur. We have spent a significant amount of time improving the logging of the pipeline so if you choose to submit a Issue about your problem please include a sizable chunk of logs as an attachment.