postprocessingscript.md

@@ -95,7 +95,8 @@ Component classification can only be done on files that have successfully run th
  * Lateral Eye Movement
  * Heartbeat
  * Muscle
- * Mixed Signal
+ * Mixed Signal  
+
 These percentages sum to 100% and the category with the highest % is selected as the guessed type. This information is useful in getting a general overview of what type of components can be found in  your data, even if you don not completely trust its choices.
 
 ![diag3](/uploads/dfa4b9cb0401bc516f5b8ebe9524f874/diag3.png)
@@ -104,18 +105,27 @@ The pie graph in diagnostics shows the fraction of components that were placed i
 
 These figures can give you a quick idea on how well you are isolating components. Ideally you are looking for components that have have a high % in one category, indicating a clear isolation.
 
-#Creating your own plotting functions
+# Creating your own plotting functions
+In order to create your own diagnostics tool you should make sure you are familiar with:
+ * The above content
+ * [Marks](https://git.sharcnet.ca/bucanl_eeglab_extensions/vised_marks/wikis/home) structure and creating by script.
+ * [Configuration files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files)
+
+This section will use these concepts along with [plotting in matlab](https://www.mathworks.com/help/matlab/creating_plots/types-of-matlab-plots.html) and the EEG. structure.
+
 
 
-Sample matrix representation of the calculate->flag->mark path for a channel mark.
-|              | Epoch Number     | 1    | 2    | 3    | 4    | 5    | 6    | 7    | 8    | 9    | 10   |                |                            |
-|--------------|------------------|------|------|------|------|------|------|------|------|------|------|----------------|----------------------------|
-| Calculation | Criteria (2.326) | 2.11 | 4.34 | 5.78 | 2.31 | 1.23 | 0.98 | 0.54 | 1.99 | 2.38 | 3.86 |                |                            |
-| Flag         | Criteria (0.1)   | 0    | 1    | 1    | 0    | 0    | 0    | 0    | 0    | 1    | 1    | 4/10 (0.4,40%) | Result: Channel is flagged |
 
 
 We are currently working on this section of the Wiki.
 %%%%%%%%%%%%%%%%%%%%%%%%%%
+ 
+Sample matrix representation of the calculate->flag->mark path for a channel mark.    
+|                      | Epoch Number     | 1    | 2    | 3    | 4    | 5    | 6    | 7    | 8    | 9    | 10   |                |                            |
+|--------------|------------------|------|------|------|------|------|------|------|------|------|------|----------------|----------------------------|
+| Calculation | Criteria (2.326) | 2.11 | 4.34 | 5.78 | 2.31 | 1.23 | 0.98 | 0.54 | 1.99 | 2.38 | 3.86 |                |                            |
+| Flag         | Criteria (0.1)   | 0    | 1    | 1    | 0    | 0    | 0    | 0    | 0    | 1    | 1    | 4/10 (0.4,40%) | Result: Channel is flagged |
+
 
 # Fin Script QA
  * Data Visualisation