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...@@ -18,38 +18,23 @@ Property grid using JIDE implementation, by Levente Hunyadi* ...@@ -18,38 +18,23 @@ Property grid using JIDE implementation, by Levente Hunyadi*
# Page Navigation # Page Navigation
**Lossless Pipeline** **Lossless Pipeline**
* [Getting Started](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/getting-started) * [Install & Download](install-download)
* [Directories Layout](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/directories) * [Getting Started](getting-started)
* [Pipeline Scripts](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/pipeline-scripts) * [Directories Layout](directories)
* [Pipeline Scripts](pipeline-scripts)
**ESS and PREP integration** **ESS and PREP integration**
* [ESS and Raw File Initialisation](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/essinit) * [ESS and Raw File Initialisation](essinit)
* [QA and Diagnostics](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/postprocessingscript) * [QA and Diagnostics](postprocessingscript)
* [PREP Pipeline Script](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/prep) * [PREP Pipeline Script](prep)
**Reference and Help** **Reference and Help**
* [Updates and Git Version Control](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/updates-and-git-version-control) * [Updates and Git Version Control](updates-and-git-version-control)
* [Contributing and Contacting us](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/contributing) * [Contributing and Contacting us](contributing)
# Downloading this Package
**Pipeline**
*Git Repository*
* Use the following command into the command terminal:
```bash # Best Practice
git clone --recursive https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica.git
```
The recursive command will download the nested sub modules that are need to run this pipeline.
**Practice Data Files**
There are 10 practice data files that can be downloaded from the following owncloud link:
* :cloud: [OwnCloud at Westgrid](https://owncloud.westgrid.ca/index.php/s/0Rf5ekmbsEJLW6c)
These files have gone through and initial script to get them in to a suitable for for the pipeline. Init scripts will depend on the type of raw data file you are starting with. These files are usually terminated with *"_init"* or *"_mrg"* for merged files.
# This Tutorial and Best Practice
There are three symbols that you should keep an eye out for in BUCANL documentation: There are three symbols that you should keep an eye out for in BUCANL documentation:
* :so: These stars highlight our recommended **Best Practices**. * :so: These stars highlight our recommended **Best Practices**.
...@@ -62,7 +47,7 @@ You will see the following symbols in other BUCANL Wiki Pages. **They are referr ...@@ -62,7 +47,7 @@ You will see the following symbols in other BUCANL Wiki Pages. **They are referr
* :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change. * :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change.
### License and Copyright ### License and Copyright
*Copyright (C) 2013 James Desjardins* *Copyright (C) 2017 James Desjardins*
*This program is free software; you can redistribute it and/or modify *This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by it under the terms of the GNU General Public License as published by
...@@ -78,5 +63,5 @@ GNU General Public License for more details.* ...@@ -78,5 +63,5 @@ GNU General Public License for more details.*
along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*
[ :arrow_up: Top of Page](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/wikis/home) [ :arrow_up: Top of Page](home)
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