essinit.md

@@ -52,7 +52,7 @@ If you want to run this script fully automatic or on a remote cluster you need t
 | Offevents      |      |    x   |    x   |    x   |    x   | Events that represent HED tag 'Custom/Marks/RecStop'                            |
 | Inevents       |         |    x   |    x   |    x   |    x   | Events that represent HED tag 'Custom/Marks/InEvent'                            |
 
-# Variable Specifics
+# Loading Variables
 
 **loadType**   
 The load type refers to whether you are starting from an ESS capsule or from a list of raw files.  Use
@@ -99,6 +99,8 @@ These are the channel indices that do not contain EEG information. ESS capsules
 
 ***
 
+# Warping Variables
+
 **Fid_chans**  
 This item is very similar to **NotEEG_chans** but the indices you are listing in this case are the fiducials. ESS capsules denote this information by specifying the channel *Type* as *FID*. ESS will automatically use witih the warping and remove these channels from EEG.data, but if you are using config you will have to specify these. For example our lab never uses the LPA,NZ and RPA fiducials recorded as the first three, using```[Fid_chans],[1 2 3]``` to set these as the landmarks for warping and then removing them from EEG.data afterwards. If you leave config empty the following GUI will be displayed. Simply type in a indices of the channels, you do not have to do [  ] brackets.
 ![fids](/uploads/bc2b77cfce9682a2f667151421c71670/fids.png)
@@ -116,6 +118,8 @@ The reference Location file is the montage that you want to warp your channel lo
 ![warp4](/uploads/0ffd5834f3356d22aae23e0861fe6ff0/warp4.png)
 
 
+# Event and Marks Variables
+
 **Onevents/Offevents/Inevents**
 ![events](/uploads/38fbc765ee402361dffbc6e0f34c0795/events.png)
 ![events2](/uploads/ed4a00ef37fd4d59ed7a979d5f7078c3/events2.png)