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tuning pipeline configs · Changes

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Updating all of the internal references to point away from the old wiki authored Apr 17, 2018 by Tyler Collins's avatar Tyler Collins
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tuning-pipeline-configs.md
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......@@ -35,7 +35,7 @@ For example in the memory field:
```matlab
3 + c* 0.1g
```
Will make jobs 3 gigabytes plus 0.1 gigabytes for each channel in the data. This would be a lot of memory so we advise against this particular expression and it is given for example. As you can see the expression can be fractional. The handling of the fractional values is handled by scheduler drivers. If the scheduler drivers do not accept a expression you believe should work please [file an issue](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica/issues).
Will make jobs 3 gigabytes plus 0.1 gigabytes for each channel in the data. This would be a lot of memory so we advise against this particular expression and it is given for example. As you can see the expression can be fractional. The handling of the fractional values is handled by scheduler drivers. If the scheduler drivers do not accept a expression you believe should work please [file an issue](https://git.sharcnet.ca/bucanl_pipelines/bids_lossless_eeg/issues).
# mpi
Do not change this setting, amica jobs are the only jobs capable of using mpi in our pipeline, any other jobs using mpi will lead to undefined behaviour and may waste cpu time or increase queue time.
......@@ -51,4 +51,4 @@ For some jobs the number of processors can be increased. Do not do this for any
This field will likely be introduced soon, this will facilitate threading on a single process. Threading massively increases the queue times on busy clusters so you should avoid specifying a high value here as it will lead to extremely poor performance on busy clusters.
***
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