pipeline-scripts.md

@@ -21,7 +21,8 @@ This section is designed to outline the key procedures of each of the pipeline s
 | Variable            | Default in Config File                           | Description |
 |--------------------|--------------------------------------------------|-------------|
 | [in_path]          | []   |     Relative path to input data files assuming cd = work_path        |
-| [montage_info] | derivatives/lossless/code/scripts/staging_script.m | Montage information to fit channel locations on a standard surface. This can be a transformations matrix (e.g. [-.14,-22,-48,-.07,0,-1.57,1080,1260,1240]), or a a file containing a transformation matrix (e.g. [batch_dfn]_transmat.mat), or a BIDS channel location tsv file (assuming that during BIDS init the channels were coregistered to the standard surface). |
+| [montage_info] |  | Montage information to fit channel locations on a standard surface. This can be a transformations matrix (e.g. [-.14,-22,-48,-.07,0,-1.57,1080,1260,1240]), or a a file containing a transformation matrix (e.g. [batch_dfn]_transmat.mat), or a BIDS channel location tsv file (assuming that during BIDS init the channels were coregistered to the standard surface). |
+| [staging script] | derivatives/lossless/code/scripts/staging_script.m | Script file path/name that creates marks based on events in the raw data file. |
 | [recur_sec]        | 1      |      Recurrence (sec) for artifact detection epoching       |
 | [limit_sec]        | [0 1] |    Limits (sec) for artifact detection epoching         |
 | [sd_t_meth]        | q    | Method used for flagging epochs (e.g. 'q' (quantiles), or 'na')           |