Skip to content

GitLab

  • Menu
Projects Groups Snippets
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
  • bids_lossless_eeg bids_lossless_eeg
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 0
    • Issues 0
    • List
    • Boards
    • Service Desk
    • Milestones
  • Merge requests 0
    • Merge requests 0
  • Deployments
    • Deployments
    • Releases
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Value stream
    • Repository
  • Wiki
    • Wiki
  • Activity
  • Graph
  • Create a new issue
  • Commits
  • Issue Boards
Collapse sidebar
  • bucanl_pipelines
  • bids_lossless_eegbids_lossless_eeg
  • Wiki
  • pipeline scripts

pipeline scripts · Changes

Page history
mikec1 modified page: Running your first job authored Mar 13, 2019 by Mike Cichonski's avatar Mike Cichonski
Hide whitespace changes
Inline Side-by-side
pipeline-scripts.md
View page @ 214cfa00
......@@ -21,7 +21,8 @@ This section is designed to outline the key procedures of each of the pipeline s
| Variable | Default in Config File | Description |
|--------------------|--------------------------------------------------|-------------|
| [in_path] | [] | Relative path to input data files assuming cd = work_path |
| [montage_info] | derivatives/lossless/code/scripts/staging_script.m | Montage information to fit channel locations on a standard surface. This can be a transformations matrix (e.g. [-.14,-22,-48,-.07,0,-1.57,1080,1260,1240]), or a a file containing a transformation matrix (e.g. [batch_dfn]_transmat.mat), or a BIDS channel location tsv file (assuming that during BIDS init the channels were coregistered to the standard surface). |
| [montage_info] | | Montage information to fit channel locations on a standard surface. This can be a transformations matrix (e.g. [-.14,-22,-48,-.07,0,-1.57,1080,1260,1240]), or a a file containing a transformation matrix (e.g. [batch_dfn]_transmat.mat), or a BIDS channel location tsv file (assuming that during BIDS init the channels were coregistered to the standard surface). |
| [staging script] | derivatives/lossless/code/scripts/staging_script.m | Script file path/name that creates marks based on events in the raw data file. |
| [recur_sec] | 1 | Recurrence (sec) for artifact detection epoching |
| [limit_sec] | [0 1] | Limits (sec) for artifact detection epoching |
| [sd_t_meth] | q | Method used for flagging epochs (e.g. 'q' (quantiles), or 'na') |
......
Clone repository
  • assumptions
  • bidsifying
  • configuring context config
  • configuring remote
  • contributing
  • developer workflow
  • directories
  • essinit
  • Home
  • init scripts
  • install download
  • opening eeglab
  • pipeline scripts
  • postprocessingscript
  • qc init
View All Pages