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directory page update authored by Tyler Collins's avatar Tyler Collins
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directories.md
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...@@ -12,13 +12,13 @@ Baseline initialization scripts and remote configuration scripts can be found at ...@@ -12,13 +12,13 @@ Baseline initialization scripts and remote configuration scripts can be found at
|**Filename**|**Explanation**| |**Filename**|**Explanation**|
|-------------|-------------| |-------------|-------------|
|bids|See BIDS section below| |bids|See BIDS section below.|
|remote_archive|Mounting point for software to transfer data| |remote_archive|Mounting point for software to transfer data|
|remote_work|Secondary mounting point for software to transfer data| |remote_work|Secondary mounting point for software to transfer data.|
|bids_init_path.m|Matlab path configuration script| |bids_init_path.m|Matlab path configuration script.|
|eeg_init_path.m|Matlab path configuration script| |eeg_init_path.m|Matlab path configuration script.|
|lossless_path.m|Matlab script to check if necessary dependencies are present and if so, adds them to the Matlab path| |lossless_path.m|Matlab script to check if necessary dependencies are present and if so, adds them to the Matlab path.|
|setup-remote.m|Configuration script for building dependencies on remote clusters. See [here](configuring-remote)| |setup-remote.m|Configuration script for building dependencies on remote clusters. See [here](configuring-remote).|
*Note: Excluded files at this level are git repository specific and have no actual effect on the pipeline* *Note: Excluded files at this level are git repository specific and have no actual effect on the pipeline*
## bids ## bids
...@@ -33,9 +33,9 @@ Baseline initialization scripts and remote configuration scripts can be found at ...@@ -33,9 +33,9 @@ Baseline initialization scripts and remote configuration scripts can be found at
## bids/derivatives/lossless ## bids/derivatives/lossless
|**Filename**|**Explanation**| |**Filename**|**Explanation**|
|-------------|-------------| |-------------|-------------|
|code|stuff| |sub-??|Subject folders containing the final output of the pipeline. Refer to bash config scripts to determine which .set file is which.|
|log|stuff| |log|Contains useful debugging information and necessary intermediate pipeline files. See below section for more details.|
|sub-??|Subject folders containing the final output of the pipeline. Refer to config scripts to determine which .set file is which.| |code|See section following the log section.|
## Log <a name="log"></a> ## Log <a name="log"></a>
Log is automatically populated with scripts when you execute the pipeline. You will see a folder generated for every script identified by the script that was run followed by the date and time of the scripts execution. These folders contain: Log is automatically populated with scripts when you execute the pipeline. You will see a folder generated for every script identified by the script that was run followed by the date and time of the scripts execution. These folders contain:
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