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tk11br created page: staging
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Sep 17, 2018
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Tyler Collins
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@@ -10,20 +10,6 @@ The goal of this page is to provide a working understanding of how the *pipeline
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@@ -10,20 +10,6 @@ The goal of this page is to provide a working understanding of how the *pipeline
## Main Pipeline Directory
## Main Pipeline Directory
Baseline initialization scripts and remote configuration scripts can be found at the highest level directory.
Baseline initialization scripts and remote configuration scripts can be found at the highest level directory.
|
**Filename**
|
**Explanation**
|
|-------------|-------------|
|bids|See BIDS section below.|
|remote_archive|Mounting point for software to transfer data|
|remote_work|Secondary mounting point for software to transfer data.|
|bids_init_path.m|Matlab path configuration script.|
|eeg_init_path.m|Matlab path configuration script.|
|lossless_path.m|Matlab script to check if necessary dependencies are present and if so, adds them to the Matlab path.|
|setup-remote.m|Configuration script for building dependencies on remote clusters. See
[
here
](
configuring-remote
)
.|
*Note: Excluded files at this level are git repository specific and have no actual effect on the pipeline*
## bids
**Note:**
From this directory level on, all file structure are fully bids compliant.
|
**Filename**
|
**Explanation**
|
|
**Filename**
|
**Explanation**
|
|-------------|-------------|
|-------------|-------------|
|code| BIDS Definition: This folder should contain the source code of scripts that prepared the dataset for running on the pipeline.
|code| BIDS Definition: This folder should contain the source code of scripts that prepared the dataset for running on the pipeline.
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