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tk11br created page: staging
authored
6 years ago
by
Tyler Collins
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@@ -10,20 +10,6 @@ The goal of this page is to provide a working understanding of how the *pipeline
## Main Pipeline Directory
Baseline initialization scripts and remote configuration scripts can be found at the highest level directory.
|
**Filename**
|
**Explanation**
|
|-------------|-------------|
|bids|See BIDS section below.|
|remote_archive|Mounting point for software to transfer data|
|remote_work|Secondary mounting point for software to transfer data.|
|bids_init_path.m|Matlab path configuration script.|
|eeg_init_path.m|Matlab path configuration script.|
|lossless_path.m|Matlab script to check if necessary dependencies are present and if so, adds them to the Matlab path.|
|setup-remote.m|Configuration script for building dependencies on remote clusters. See
[
here
](
configuring-remote
)
.|
*Note: Excluded files at this level are git repository specific and have no actual effect on the pipeline*
## bids
**Note:**
From this directory level on, all file structure are fully bids compliant.
|
**Filename**
|
**Explanation**
|
|-------------|-------------|
|code| BIDS Definition: This folder should contain the source code of scripts that prepared the dataset for running on the pipeline.
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