configuring-remote.md

@@ -15,7 +15,7 @@ Note that using `scp` and its equivalents on the root bids directory will also c
 
 **Setup Script**
 
-On the remote, do the following:
+On the remote end, do the following:
 ```bash
 cd /path/to/root/of/project
 # chmod +x of the setup-remote.sh script is only required if
@@ -32,18 +32,18 @@ Eventually, you will receive the following message for both Octave and Amica:
 Prompt:We need to load session environment variables for amica
 Prompt:Select a file containing environment variables
 Note:You may need to select a different version based on your scheduler
-File name: [bids/code/lossless/config/amica.sesinit]: 
+File name: [../derivatives/lossless/code/config/amica.sesinit]:
 ```
 
 * If you are using  Compute Canada's Graham cluster or Cedar cluster you will want to leave this as the default. (Just press enter)
-* If you are using Orca or Redfin you will want to use "bids/derivatives/lossless/code/config/amica-sqsub.sesinit". 
+* If you are using Orca or Redfin you will want to use `../derivatives/lossless/code/config/amica-sqsub.sesinit`. 
 
 Note: `setup-remote.sh` has readline enabled so you may use tab completion for the file names.
 
 ## Lock Files
 If somehow the `setup-remote.sh` script has failed halfway through, mechanisms are in place to make sure that completed steps are not repeated. 
 
-To recompile a pipeline dependency, remove the respective `.lock` file specified by the script and run `setup-remote.sh` again.
+To recompile a pipeline dependency, remove the respective `.lock` file  specified by the script located in `derivatives/lossless/code/misc/locks/`  and run `setup-remote.sh` again.
 
 ## Practice Data Files
 Sample data and information for your first test runs can be found [here](sample-data).