tk11br created page: sample data authored by Tyler Collins's avatar Tyler Collins
...@@ -11,6 +11,8 @@ If these requirements are not met, the pipeline's setup script will return an ap ...@@ -11,6 +11,8 @@ If these requirements are not met, the pipeline's setup script will return an ap
## Installation ## Installation
To synchronize your data/pipeline project directory with the remote cluster, use `scp` or another method supported by your remote cluster administrators. Secure copy (`scp`) will copy all files over the existing files and therefore wastes time transferring files that already exist on the remote. Systems that support `scp`/`ssh` usually will support `rsync` as well. This command only sends the differences between your files and the remote files speeding up your transfer. You may also use a visual diff program like `meld` over `sshfs` which is a "secure shell file system." For Windows a suitable program for `scp` is [MobaXterm](http://mobaxterm.mobatek.net/). For Unix/Linux & MacOS users you will already have `scp` and you likely will also have `rsync`. To synchronize your data/pipeline project directory with the remote cluster, use `scp` or another method supported by your remote cluster administrators. Secure copy (`scp`) will copy all files over the existing files and therefore wastes time transferring files that already exist on the remote. Systems that support `scp`/`ssh` usually will support `rsync` as well. This command only sends the differences between your files and the remote files speeding up your transfer. You may also use a visual diff program like `meld` over `sshfs` which is a "secure shell file system." For Windows a suitable program for `scp` is [MobaXterm](http://mobaxterm.mobatek.net/). For Unix/Linux & MacOS users you will already have `scp` and you likely will also have `rsync`.
Note that using `scp` and its equivalents on the root bids directory will also copy your data to the remote if you have followed the BIDS standard. Sample data may be found [here](#practice-data-files) to prepare for running your first job.
**Setup Script** **Setup Script**
On the remote, do the following: On the remote, do the following:
...@@ -38,12 +40,8 @@ File name: [bids/code/lossless/config/amica.sesinit]: ...@@ -38,12 +40,8 @@ File name: [bids/code/lossless/config/amica.sesinit]:
Note: `./setup-remote.sh` has readline enabled so you may use tab completion for the file names. Note: `./setup-remote.sh` has readline enabled so you may use tab completion for the file names.
**Data** ## Practice Data Files
Sample data and information for your first test runs can be found [here](sample-data).
Before setting up the remote cluster machine(s) you should consider uploading your
**Practice Data Files**
For sample data to test your first execution of the pipeline see [this](sample-data) page.
[ :arrow_right: **Next Step**](running-your-first-job) [ :arrow_right: **Next Step**](running-your-first-job)
[ :house: **Return to Main Page**](https://git.sharcnet.ca/bucanl_pipelines/bids_lossless_eeg/wikis/home) [ :house: **Return to Main Page**](https://git.sharcnet.ca/bucanl_pipelines/bids_lossless_eeg/wikis/home)
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