... | ... | @@ -11,6 +11,8 @@ If these requirements are not met, the pipeline's setup script will return an ap |
|
|
## Installation
|
|
|
To synchronize your data/pipeline project directory with the remote cluster, use `scp` or another method supported by your remote cluster administrators. Secure copy (`scp`) will copy all files over the existing files and therefore wastes time transferring files that already exist on the remote. Systems that support `scp`/`ssh` usually will support `rsync` as well. This command only sends the differences between your files and the remote files speeding up your transfer. You may also use a visual diff program like `meld` over `sshfs` which is a "secure shell file system." For Windows a suitable program for `scp` is [MobaXterm](http://mobaxterm.mobatek.net/). For Unix/Linux & MacOS users you will already have `scp` and you likely will also have `rsync`.
|
|
|
|
|
|
Note that using `scp` and its equivalents on the root bids directory will also copy your data to the remote if you have followed the BIDS standard. Sample data may be found [here](#practice-data-files) to prepare for running your first job.
|
|
|
|
|
|
**Setup Script**
|
|
|
|
|
|
On the remote, do the following:
|
... | ... | @@ -38,12 +40,8 @@ File name: [bids/code/lossless/config/amica.sesinit]: |
|
|
|
|
|
Note: `./setup-remote.sh` has readline enabled so you may use tab completion for the file names.
|
|
|
|
|
|
**Data**
|
|
|
|
|
|
Before setting up the remote cluster machine(s) you should consider uploading your
|
|
|
|
|
|
**Practice Data Files**
|
|
|
For sample data to test your first execution of the pipeline see [this](sample-data) page.
|
|
|
## Practice Data Files
|
|
|
Sample data and information for your first test runs can be found [here](sample-data).
|
|
|
|
|
|
[ :arrow_right: **Next Step**](running-your-first-job)
|
|
|
[ :house: **Return to Main Page**](https://git.sharcnet.ca/bucanl_pipelines/bids_lossless_eeg/wikis/home) |
|
|
\ No newline at end of file |