Click "Load context config" in the top left of your window. Navigate to analysis/support/config and select `contextconfig.cfg`. Pressing "Refresh" in the Context configuration will also load your system commands if you desire to use those.
Pressing "Refresh" in the Context configuration will also load your system commands if you desired.
We can provide only limited support for these options as they are environment specific and require knowledge from your system administrators.
The following list details the minimum options that should be changed to your respective cluster's information and updated inside of the context configuration menu.
The options we will be changing are as follows:
***remote_user_name** - Username on the cluster.
**remote_user_name**
***remote_exec_host** - ssh host name, this should be a fully qualified host name or a host name that can be resolved by the system as your cluster host name.
This should be your username on the remote cluster
***remote_project_archive** - Directory on the same remote server safe for archiving potentially large data files.
**remote_exec_host**
***remote_project_work** - Directory the containing data files and all other project files. Should mirror the location chosen for remote installation.
ssh host name, this should be a fully qualified host name or a host name that can be resolved by the system as your cluster host name.
***remote_dependency** - This field should be equal to the value of remote_project_work followed by `/bids/code/lossless/dependencies`.
Tip: `.ssh/config` applies here so aliases built into the ssh config file can be used instead of full host names this applies to all of the remote paths
**remote_project_archive**
This is the directory on a remote server we use for archiving data files, this not necessary for the pipeline to function properly but is used with some of the system commands.
**remote_project_work**
This is the directory the contains your data files and all other project files that were remotely copied to the server in the install steps.
**remote_dependency**
This field should be equal to the value of remote_project_work followed by `/analysis/support/dependencies`
Press Save as and save the new context configuration as "mycontextconfig.cfg" in your analysis/support/config directory
Press Save as and save the new context configuration as "mycontextconfig.cfg" in your analysis/support/config directory
