Commit fd84e0b5 authored by mikeCplus's avatar mikeCplus
Browse files

added back face13_sbatch example config files

parent 39dae2b6
file_name
c01_scalpart_remote.cfg
exec_func
ef_sbatch
replace_string
[in_path],[]
[montage_info],[-.14,-22,-48,-.07,0,-1.57,1080,1260,1240]
[staging_script],derivatives/lossless/code/scripts/face13_staging.m
[aref_trim],30
[recur_sec],1
[limit_sec],[0 1]
[sd_t_meth],na
[sd_t_vals],[.15 .85]
[sd_t_o],3
[sd_t_f_meth],fixed
[sd_t_f_vals],
[sd_t_f_o],.2
[sd_t_pad],1
[sd_ch_meth],q
[sd_ch_vals],[.15 .85]
[sd_ch_o],3
[sd_ch_f_meth],fixed
[sd_ch_f_vals],
[sd_ch_f_o],.2
[ref_loc_file],derivatives/lossless/code/misc/standard_1020_bucanl19.elc
[low_bound_hz],1
[high_bound_hz],30
[save_f_res],1
[n_nbr_ch],3
[r_ch_meth],q
[r_ch_vals],[.15,.85]
[r_ch_o],3
[r_ch_f_meth],fixed
[r_ch_f_vals],
[r_ch_f_o],.2
[bridge_trim],40
[bridge_z],6
[n_nbr_t],3
[r_t_meth],q
[r_t_vals],[.15 .85]
[r_t_o],3
[r_t_f_meth],fixed
[r_t_f_vals],
[r_t_f_o],.2
[min_gap_ms],2000
[out_path],derivatives/lossless
[amica_param_file],derivatives/lossless/code/misc/amica15_default.param
[amica_threads_s02],8
order
1
session_init
derivatives/lossless/code/config/octave.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
m_init
derivatives/lossless/code/config/octave.minit
submit_options
--account=def-jdesjard
memory
16g
time_limit
30m
mpi
false
num_tasks
1
threads_per_task
software
octave
program_options
file_name
c02_amica_init_remote.cfg
exec_func
ef_sbatch
replace_string
[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
[in_path],analysis/data/2_preproc
[amica_ver],amica15
order
[2 1]
session_init
derivatives/lossless/code/config/amica.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
derivatives/lossless/code/config/amica.jobinit
m_init
submit_options
--account=def-jdesjard
memory
2G
time_limit
1h
mpi
true
num_processors
threads_per_task
8
software
none
program_options
file_name
c03_compart_data_remote.cfg
exec_func
ef_sbatch
replace_string
[in_path],derivatives/lossless
[recur_sec],1
[limit_sec],[0 1]
[sd_t_meth],q
[sd_t_vals],[.15 .85]
[sd_t_o],3
[sd_t_f_meth],fixed
[sd_t_f_vals],
[sd_t_f_o],.2
[min_gap_ms],2000
[out_path],derivatives/lossless
[amica_param_file],derivatives/lossless/code/misc/amica_default.param
[amica_threads_s07_08_09],8
order
[3 2]
session_init
derivatives/lossless/code/config/octave.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
m_init
derivatives/lossless/code/config/octave.minit
submit_options
--account=def-jdesjard
memory
16g
time_limit
30m
mpi
false
software
octave
program_options
file_name
c04a_amica_remote.cfg
exec_func
ef_sbatch
replace_string
[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
[in_path],analysis/data/2_preproc
[amica_ver],amica15
order
[4 3]
session_init
derivatives/lossless/code/config/amica.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
derivatives/lossless/code/config/amica.jobinit
m_init
submit_options
--account=def-jdesjard
memory
2G
time_limit
2h
mpi
true
num_processors
threads_per_task
8
software
none
program_options
file_name
c04b_amica_remote.cfg
exec_func
ef_sbatch
replace_string
[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
[in_path],analysis/data/2_preproc
[amica_ver],amica15
order
[4 3]
session_init
derivatives/lossless/code/config/amica.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
derivatives/lossless/code/config/amica.jobinit
m_init
submit_options
--account=def-jdesjard
memory
2G
time_limit
2h
mpi
true
num_processors
threads_per_task
8
software
none
program_options
file_name
c04c_amica_remote.cfg
exec_func
ef_sbatch
replace_string
[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
[in_path],analysis/data/2_preproc
[amica_ver],amica15
order
[4 3]
session_init
derivatives/lossless/code/config/amica.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
derivatives/lossless/code/config/amica.jobinit
m_init
submit_options
--account=def-jdesjard
memory
2G
time_limit
2h
mpi
true
num_processors
threads_per_task
8
software
none
program_options
file_name
c05_concat_data_remote.cfg
exec_func
ef_sbatch
replace_string
[in_path],derivatives/lossless
[recur_sec],1
[limit_sec],[0 1]
[sd_t_meth],q
[sd_t_vals],[.15 .85]
[sd_t_o],3
[sd_t_f_meth],fixed
[sd_t_f_vals],
[sd_t_f_o],.2
[min_gap_ms],2000
[icr_crit],0.05
[dip_vol], derivatives/lossless/code/misc/standard_vol.mat
[dip_mri], derivatives/lossless/code/misc/standard_mri.mat
[dip_elc], derivatives/lossless/code/misc/standard_1020.elc
[dip_transmat], [0 0 0 0 0 0 1 1 1]
[cor_transmat], [0,0,0,0,0,1.57,1,1,1]
[cor_nosedir], +X
[out_path],derivatives/lossless
order
[5 4]
session_init
derivatives/lossless/code/config/octave.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
m_init
derivatives/lossless/code/config/octave.minit
submit_options
--account=def-jdesjard
memory
8g
time_limit
1h
mpi
false
num_processors
threads_per_task
8
software
octave
program_options
file_name
c99_clean.cfg
exec_func
ef_sbatch
replace_string
[in_path],anaylsis/log
[preproc_amica_param],true
[preproc_amicaout],true
[preproc_concat_data],true
[preproc_concat_asr],false
[preproc_sa],true
[preproc_sa_purge],true
[preproc_asr],true
[preproc_asr_purge],true
[preproc_compart_data_purge],true
[preproc_compart_data],true
[preproc_dip],false
[trash_root],true
[zip_successful_logs],true
[delete_successful_logs],true
[use_system_xz],true
[use_system_gzip],false
[use_zip],false
order
[13 12]
session_init
analysis/support/config/octave.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
m_init
analysis/support/config/octave.minit
qsub_options
memory
3g
time_limit
20m
mpi
false
num_processors
1
software
octave
program_options
file_name
c20_rebuild_remote.cfg
exec_func
ef_sqsub
replace_string
[in_path],analysis/data/2_preproc
[ori_in_path],analysis/data/1_init
[out_path],analysis/data/2_preproc
[datafile],concat_asrdata
[remasrloss],'YES'
[remfilterloss],'YES'
order
[20]
session_init
analysis/support/config/octave.sesinit
job_name
[batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
mfile_name
[/,-1,batch_dfn,.,-1]
job_init
m_init
analysis/support/config/octave.minit
qsub_options
-r 1h --mpp 6G
memory
6g
time_limit
1h
mpi
false
numprocesors
1
software
octave
program_options
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