New structure additions.

.gitignore

@@ -6,7 +6,7 @@ octave-workspace
 # But keep the pipeline code.
 # !derivatives/lossless/code/*
 derivatives/lossless/log
-code/eeg_init
+code/eeg_init/*
 code/misc
 
 # Specifically hide the staging script
@@ -22,3 +22,4 @@ sub-*
 participants.tsv
 dataset_description.json
 grp_*
+*.mat

code/eeg_init/eeg_init.m

-function eeg_init(EEG,infname)
-
-disp(['current file: ', infname(1:end-1)])
-
-%parse infname.
-[p,n]=fileparts(infname);
-%subject ID
-subids_ind=strfind(lower(n),'ec_t')+6;
-subide_ind=strfind(lower(n),'ec_t')+8;
-subid=n(subids_ind:subide_ind);
-
-if isempty(str2num(subid));
-    ecs_ind=strfind(lower(n),'ec');
-    if strcmp(lower(n(ecs_ind+7)),'t');
-        subid=n(ecs_ind+3:ecs_ind+5);
-    elseif strcmp(lower(n(ecs_ind+6)),'t');
-        subid=n(ecs_ind+2:ecs_ind+4);
-    elseif strcmp(lower(n(ecs_ind+3)),'p');
-        subid=n(ecs_ind+5:ecs_ind+7);
-    end
-    
-    if isempty(str2num(subid));
-        disp('COULD NOT FIND THE SUBJECT ID.');
-        return;
-    end
-end
-
-%session ID 
-sesids_ind=strfind(n,'_t')+2;
-sesid=n(sesids_ind);
-
-if isempty(str2num(sesid));
-    disp('COULD NOT FIND THE SESSION ID.');
-    return;
-end
-
-if strcmp(sesid,'1');
-    agelab='m06';
-    tasklab='t1task';
-elseif strcmp(sesid,'2');
-    agelab='m12';
-    tasklab='t2task';
-elseif strcmp(sesid,'3');
-    agelab='m18';
-    tasklab='t3task';
-end
-
-outfpath=['sub-s',subid,'/ses-',agelab,'/eeg/'];
-disp(['outpath: ', outfpath]);
-disp(['current session: ' sesid]);
-
-    
-EEG = pop_readegi(infname(1:end-1), [],[],'auto');
-
-%ADD Cz TO DATA ARRAY.
-EEG.data(129,:)=zeros(size(EEG.data(1,:)));
-EEG.nbchan=129;
-EEG.chanlocs(129)=EEG.chanlocs(128);
-EEG.chanlocs(129).labels=EEG.chaninfo.nodatchans(4).labels;
-EEG.chanlocs(129).Y=EEG.chaninfo.nodatchans(4).Y;
-EEG.chanlocs(129).X=EEG.chaninfo.nodatchans(4).X;
-EEG.chanlocs(129).Z=EEG.chaninfo.nodatchans(4).Z;
-EEG.chanlocs(129).sph_theta=EEG.chaninfo.nodatchans(4).sph_theta;
-EEG.chanlocs(129).sph_phi=EEG.chaninfo.nodatchans(4).sph_phi;
-EEG.chanlocs(129).sph_radius=EEG.chaninfo.nodatchans(4).sph_radius;
-EEG.chanlocs(129).theta=EEG.chaninfo.nodatchans(4).theta;
-EEG.chanlocs(129).radius=EEG.chaninfo.nodatchans(4).radius;
-EEG.chanlocs(129).type='EEG';
-EEG.chaninfo.nodatchans=EEG.chaninfo.nodatchans(1:3);
-
-EEG = pop_chanedit(EEG, 'load',{'sourcedata/misc/GSN129.sfp' 'filetype' 'autodetect'});
-
-if ~isempty(EEG.event);
-    for i=1:length(EEG.event);
-        if strcmp(EEG.event(i).type,'epoc');
-            EEG.event(i).type='boundary';
-        end
-    end
-end
-
-% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
-if ~exist(outfpath);
-    disp(['Making directory ', outfpath]);
-    eval(['mkdir ' outfpath]);
-end
-
-outfname=['sub-s',subid,'_ses-',agelab,'_task-',tasklab,'_eeg.set'];
-
-if strcmp(n(1:2),'p0');
-    outfname = ['sub-s',subid,'_ses-',agelab,'_task-',tasklab,'_eeg_',n(1:3),'.set'];
-end
-
-if strcmp(n(end-5:end-3),'eeg');
-    outfname = ['sub-s',subid,'_ses-',agelab,'_task-',tasklab,'_eeg_p',n(end-1:end),'.set'];
-end
-
-disp(outfname);
-
-%save output set file
-EEG = pop_saveset( EEG, 'filename',[outfpath,'/',outfname]);
-end

code/eeg_init/init_script.m

-[x,y] = system('find . -type f -name *.raw');
-filenames = strsplit(y,'./');
-filenames = filenames(2:end);
-for i=1:length(filenames);
-   eeg_init(EEG,filenames{i});
-end
\ No newline at end of file