added local pipeline batch configs and small typo fix in seg script

derivatives/lossless/code/config/ef_current_base/c01_scalpart_local.cfg

+file_name
+	c01_scalpart_remote.cfg
+exec_func
+	ef_current_base
+replace_string
+	[in_path],[]
+	[montage_info],
+	[staging_script],
+	[aref_trim],30
+	[recur_sec],1
+	[limit_sec],[0 1]
+	[sd_t_meth],q
+	[sd_t_vals],[.3 .7]
+	[sd_t_o],12
+	[sd_t_f_meth],fixed
+	[sd_t_f_vals],
+	[sd_t_f_o],.3
+	[sd_t_pad],1
+	[sd_ch_meth],q
+	[sd_ch_vals],[.3 .7]
+	[sd_ch_o],12
+	[sd_ch_f_meth],fixed
+	[sd_ch_f_vals],
+	[sd_ch_f_o],.3
+	[ref_loc_file],derivatives/lossless/code/misc/standard_1020_bucanl19.elc
+	[low_bound_hz],1
+	[high_bound_hz],
+	[save_f_res],1
+	[n_nbr_ch],3
+	[r_ch_meth],q
+	[r_ch_vals],[.3 .7]
+	[r_ch_o],12
+	[r_ch_f_meth],fixed
+	[r_ch_f_vals],
+	[r_ch_f_o],.3
+	[bridge_trim],40
+	[bridge_z],6
+	[n_nbr_t],3
+	[r_t_meth],q
+	[r_t_vals],[.3 .7]
+	[r_t_o],12
+	[r_t_f_meth],fixed
+	[r_t_f_vals],
+	[r_t_f_o],.3
+	[min_gap_ms],2000
+	[out_path],derivatives/lossless
+	[amica_param_file],derivatives/lossless/code/misc/amica15_default.param
+	[amica_threads_s02],8
+order
+    1
+session_init
+
+job_name
+
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+	 
+m_init
+
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	false
+num_tasks
+
+threads_per_task
+	
+software
+    matlab
+program_options
+	

derivatives/lossless/code/config/ef_current_base/c02_amica_init_local.cfg

+file_name
+	c02_amica_init_remote.cfg
+exec_func
+	ef_current_base
+replace_string
+	[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
+	[in_path],[]
+	[amica_ver],amica15ub
+order
+	[2 1]
+session_init
+
+job_name
+    [batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+
+m_init
+	
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	true
+num_tasks
+	 
+threads_per_task
+	8
+software
+	none
+program_options
+	 
+ 

derivatives/lossless/code/config/ef_current_base/c03_compart_data_local.cfg

+file_name
+	c03_compart_data_remote.cfg
+exec_func
+	ef_sbatch
+replace_string
+	[in_path],derivatives/lossless
+	[recur_sec],1
+	[limit_sec],[0 1]
+	[sd_t_meth],q
+	[sd_t_vals],[.3 .7]
+	[sd_t_o],6
+	[sd_t_f_meth],fixed
+	[sd_t_f_vals],
+	[sd_t_f_o],.2
+	[min_gap_ms],2000
+	[out_path],derivatives/lossless
+	[amica_param_file],derivatives/lossless/code/misc/amica_default.param
+	[amica_threads_s04],8
+order
+	[3 2]
+session_init
+
+job_name
+
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+	 
+m_init
+
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	false
+num_tasks
+	 
+threads_per_task
+	 
+software
+    matlab
+program_options
+	

derivatives/lossless/code/config/ef_current_base/c04a_amica_local.cfg

+file_name
+	c04a_amica_remote.cfg
+exec_func
+	ef_current_base
+replace_string
+	[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
+	[in_path],analysis/data/2_preproc
+	[amica_ver],amica15ub
+order
+	[4 3]
+session_init
+
+job_name
+    [batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+
+m_init
+	
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	true
+num_tasks
+	 
+threads_per_task
+	8
+software
+	none
+program_options
+	

derivatives/lossless/code/config/ef_current_base/c04b_amica_local.cfg

+file_name
+	c04b_amica_remote.cfg
+exec_func
+	ef_current_base
+replace_string
+	[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
+	[in_path],analysis/data/2_preproc
+	[amica_ver],amica15ub
+order
+	[4 3]
+session_init
+
+job_name
+    [batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+
+m_init
+	
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	true
+num_tasks
+	 
+threads_per_task
+	8
+software
+	none
+program_options
+	

derivatives/lossless/code/config/ef_current_base/c04c_amica_local.cfg

+file_name
+	c04c_amica_remote.cfg
+exec_func
+	ef_current_base
+replace_string
+	[dep_path],derivatives/lossless/code/dependencies/eeglab_asr_amica/plugins/amica
+	[in_path],analysis/data/2_preproc
+	[amica_ver],amica15ub
+order
+	[4 3]
+session_init
+
+job_name
+    [batch_hfn,.,1]_[/,-1,batch_dfn,.,-1]
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+
+m_init
+	
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	true
+num_tasks
+	 
+threads_per_task
+	8
+software
+	none
+program_options
+	

derivatives/lossless/code/config/ef_current_base/c05_concat_data_local.cfg

+file_name
+	c05_concat_data_remote.cfg
+exec_func
+	ef_current_base
+replace_string
+	[in_path],derivatives/lossless
+	[recur_sec],1
+	[limit_sec],[0 1]
+	[sd_t_meth],q
+	[sd_t_vals],[.3 .7]
+	[sd_t_o],6
+	[sd_t_f_meth],fixed
+	[sd_t_f_vals],
+	[sd_t_f_o],.2
+	[min_gap_ms],2000
+	[icr_crit],0.05
+	[dip_vol], derivatives/lossless/code/misc/standard_vol.mat
+	[dip_mri], derivatives/lossless/code/misc/standard_mri.mat
+	[dip_elc], derivatives/lossless/code/misc/standard_1020.elc
+	[dip_transmat], [0 0 0 0 0 0 1 1 1]
+	[cor_transmat], [0,0,0,0,0,1.57,1,1,1]
+	[cor_nosedir], +X
+	[out_path],derivatives/lossless
+order
+	[5 4]
+session_init
+
+job_name
+
+mfile_name
+	[/,-1,batch_dfn,.,-1]
+job_init
+	 
+m_init
+
+submit_options
+
+memory
+
+time_limit
+
+mpi
+	false
+num_tasks
+	 
+threads_per_task
+	8
+software
+	matlab
+program_options
+	 

derivatives/lossless/code/scripts/seg.htb

@@ -117,7 +117,7 @@ EEG = pop_marks_select_data(EEG,'component marks',[],'labels',{'manual'},'remove
 EEG = eeg_checkset(EEG);
 logging_log('INFO', 'TIME TO: PURGE DATA...');
 
-if strncmp('[reref]','on');
+if strcmp('[reref]','on');
     EEG = pop_reref(EEG,[]);
 end;
 
@@ -146,7 +146,7 @@ if ([[high_bound_hz]]);
     EEG = pop_eegfiltnew(EEG,[],[[high_bound_hz]],[],0,[],0);
 end;
 
-if strncmp('[reref]','on');
+if strcmp('[reref]','on');
     EEG = pop_reref(EEG,[]);
 end;