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bucanl_pipelines
bids_lossless_eeg
Commits
705205e0
Commit
705205e0
authored
Sep 18, 2018
by
Tyler Collins
Browse files
Adding tutorial configuration back in.
parent
47c3f63a
Changes
2
Hide whitespace changes
Inline
Side-by-side
code/face13_init/eeg_init.m
0 → 100644
View file @
705205e0
function
eeg_init
(
inbdffiles
,
outsetfile
)
%loop through inbdffiles
for
i
=
1
:
length
(
inbdffiles
);
%import bdf file
ALLEEG
(
i
)
=
pop_biosig
(
inbdffiles
{
i
},
'channels'
,
1
:
128
);
%resample to 512
ALLEEG
(
i
)
=
pop_resample
(
ALLEEG
(
i
),
512
);
end
%merge files
EEG
=
pop_mergeset
(
ALLEEG
,
1
:
length
(
ALLEEG
),
0
);
%load average BUCANL BioSemi head channel coordinates
EEG
=
pop_chanedit
(
EEG
,
'load'
,{
'sourcedata/misc/BioSemi_BUCANL_EEGLAB.sfp'
'filetype'
'autodetect'
});
%rename events
for
i
=
1
:
length
(
EEG
.
event
);
if
isnumeric
(
EEG
.
event
(
i
)
.
type
);
EEG
.
event
(
i
)
.
type
=
num2str
(
EEG
.
event
(
i
)
.
type
);
end
if
strcmp
(
EEG
.
event
(
i
)
.
type
,
'11'
);
EEG
.
event
(
i
)
.
type
=
'house-upright-f1'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'12'
);
EEG
.
event
(
i
)
.
type
=
'house-upright-f2'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'13'
);
EEG
.
event
(
i
)
.
type
=
'house-upright-f3'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'14'
);
EEG
.
event
(
i
)
.
type
=
'house-upright-f4'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'15'
);
EEG
.
event
(
i
)
.
type
=
'house-upright-f5'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'16'
);
EEG
.
event
(
i
)
.
type
=
'house-upright-f6'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'21'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted-f1'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'22'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted-f2'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'23'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted-f3'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'24'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted-f4'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'25'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted-f5'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'26'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted-f6'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'31'
);
EEG
.
event
(
i
)
.
type
=
'face-upright-f1'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'32'
);
EEG
.
event
(
i
)
.
type
=
'face-upright-f2'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'33'
);
EEG
.
event
(
i
)
.
type
=
'face-upright-f3'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'34'
);
EEG
.
event
(
i
)
.
type
=
'face-upright-f4'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'35'
);
EEG
.
event
(
i
)
.
type
=
'face-upright-f5'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'36'
);
EEG
.
event
(
i
)
.
type
=
'face-upright-f6'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'41'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted-f1'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'42'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted-f2'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'43'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted-f3'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'44'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted-f4'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'45'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted-f5'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'46'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted-f6'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'51'
);
EEG
.
event
(
i
)
.
type
=
'checker-f1'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'52'
);
EEG
.
event
(
i
)
.
type
=
'checker-f2'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'53'
);
EEG
.
event
(
i
)
.
type
=
'checker-f3'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'54'
);
EEG
.
event
(
i
)
.
type
=
'checker-f4'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'55'
);
EEG
.
event
(
i
)
.
type
=
'checker-f5'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'56'
);
EEG
.
event
(
i
)
.
type
=
'checker-f6'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'211'
);
EEG
.
event
(
i
)
.
type
=
'face-upright'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'212'
);
EEG
.
event
(
i
)
.
type
=
'face-inverted'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'213'
);
EEG
.
event
(
i
)
.
type
=
'house-upright'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'214'
);
EEG
.
event
(
i
)
.
type
=
'house-inverted'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'215'
);
EEG
.
event
(
i
)
.
type
=
'checker-left'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'216'
);
EEG
.
event
(
i
)
.
type
=
'checker-right'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'201'
);
EEG
.
event
(
i
)
.
type
=
'press-left'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'204'
);
EEG
.
event
(
i
)
.
type
=
'press-right'
;
elseif
strcmp
(
EEG
.
event
(
i
)
.
type
,
'boundary'
);
EEG
.
event
(
i
)
.
duration
=
0
;
else
EEG
.
event
(
i
)
.
type
=
[
'e-'
,
num2str
(
EEG
.
event
(
i
)
.
type
)];
end
end
%save output set file
EEG
=
pop_saveset
(
EEG
,
'filename'
,
outsetfile
);
code/face13_init/init_script.m
0 → 100644
View file @
705205e0
diary
'sourcedata/eeg/sub-s01.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s01/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P01_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_f_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_f_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P01_O_4.bdf'
},
...
'sub-s01/eeg/sub-s01_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s02.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s02/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P02_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P02_O_4.bdf'
},
...
'sub-s02/eeg/sub-s02_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s03.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s03/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P03_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P03_O_4.bdf'
},
...
'sub-s03/eeg/sub-s03_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s04.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s04/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P04_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P04_O_4.bdf'
},
...
'sub-s04/eeg/sub-s04_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s05.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s05/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P05_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P05_O_4.bdf'
},
...
'sub-s05/eeg/sub-s05_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s06.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s06/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P06_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P06_O_4.bdf'
},
...
'sub-s06/eeg/sub-s06_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s07.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s07/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P07_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P07_O_4.bdf'
},
...
'sub-s07/eeg/sub-s07_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s08.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s08/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P08_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P08_O_4.bdf'
},
...
'sub-s08/eeg/sub-s08_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s09.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s09/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P09_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P09_O_4.bdf'
},
...
'sub-s09/eeg/sub-s09_task-faceFO_eeg.set'
);
diary
'sourcedata/eeg/sub-s10.log'
;
%% CHECK FOR OUTPUT PATH AND CRETAE IF NECESSARY
system
(
'mkdir -p sub-s10/eeg'
);
eeg_init
({
'sourcedata/eeg/IC_trn_P10_F_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_F_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_F_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_F_4.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_O_1.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_O_2.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_O_3.bdf'
,
...
'sourcedata/eeg/IC_trn_P10_O_4.bdf'
},
...
'sub-s10/eeg/sub-s10_task-faceFO_eeg.set'
);
\ No newline at end of file
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