Updated Home (markdown) authored by Andrew Lofts's avatar Andrew Lofts
Brief demo of interpolating a data set to locations in a coordinate file [here.](http://youtu.be/Q8qYxNvz_OQ)
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Brief demo of interpolating a data set to locations in a coordinate file [here.](http://youtu.be/Q8qYxNvz_OQ)
# Abstract
The batch_context extension for EEGLAB provides and interface for generating data
processing pipelines and executing them on multiple data files either locally or
on remote compute clusters. This extension also provides the tools needed to manages
remote server addresses and facilitates working with a remote environments.
***
*Code written by James A. Desjardins, supported by NSERC funding to Sidney J. Segalowitz
at the Jack and Nora Walker Centre for Lifespan Development Research (Brock University),
and a Dedicated Programming award from SHARCNet, Compute Ontario.*
*This package includes the following external tools from the Matlab File Share:
Property grid using JIDE implementation, by Levente Hunyadi*
*System applications that work well with the Context plugin include
Meld 1.7 (or later), sshfs, and rsync.*
# Page Navigation
* [Script Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/script-files)
* [Configuration Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files)
* [Running Pipelines](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts)
* [Tutorial Packages](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/tutorials)
* [Managing Remote Projects](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/remote-start-up)
* [Functions](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/functions)
* [Contributing and Contacting Us](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/contributing)
# Tutorials and Best Practice
There are three symbols that you should keep an eye out for in this documentation:
* :so: These stars highlight our recommended **Best Practices**.
* :b: The letter B indicates an **Example** based off of the BUCANL Pipeline Tutorials.
* :warning: This warning indicates when you have to **Change a Tutorial File** if you are using one of the EEG_pipe packages
***
* :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change.
# Overview
Running a successful job using batch context consists of 5 main components:
1. Data Files
2. [Scripts](https://git.sharcnet.ca/jdesjard/batch_context/wikis/script-files)
3. [Batch Configuration Files](https://git.sharcnet.ca/jdesjard/batch_context/wikis/configuration-files)
4. [Context Configuration File](https://git.sharcnet.ca/jdesjard/batch_context/wikis/configuration-files)
5. [Local or Remote Computing Resources ](https://git.sharcnet.ca/jdesjard/batch_context/wikis/running-scripts)
All of these components will need to be selected or loaded into the main batch context user interface before the batch is executed. Running your data file in a batch is an effective way to execute script pipelines on large sets of data files.
:so: Download the [Tutorial Pipeline](https://git.sharcnet.ca/jdesjard/batch_context/wikis/tutorials) and work your way through the wiki pages. If you want to get right to running a job go to [Running scripts](https://git.sharcnet.ca/jdesjard/batch_context/wikis/running-scripts) and use :b: provided files.
![overveiwallcolor](/uploads/6d4cc7aaaef80e191998f4d27453c7b2/overveiwallcolor.png)
## Copywrite
Copyright (C) 2013 James Desjardins
*This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.*
*This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.*
*You should have received a copy of the GNU General Public License
along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*
[ :arrow_up: Top of Page](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/home)