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Brief demo of interpolating a data set to locations in a coordinate file [here.](http://youtu.be/Q8qYxNvz_OQ)
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Brief demo of interpolating a data set to locations in a coordinate file [here.](http://youtu.be/Q8qYxNvz_OQ)
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# Abstract
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The batch_context extension for EEGLAB provides and interface for generating data
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processing pipelines and executing them on multiple data files either locally or
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on remote compute clusters. This extension also provides the tools needed to manages
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remote server addresses and facilitates working with a remote environments.
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***
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*Code written by James A. Desjardins, supported by NSERC funding to Sidney J. Segalowitz
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at the Jack and Nora Walker Centre for Lifespan Development Research (Brock University),
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and a Dedicated Programming award from SHARCNet, Compute Ontario.*
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*This package includes the following external tools from the Matlab File Share:
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Property grid using JIDE implementation, by Levente Hunyadi*
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*System applications that work well with the Context plugin include
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Meld 1.7 (or later), sshfs, and rsync.*
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# Page Navigation
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* [Script Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/script-files)
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* [Configuration Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files)
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* [Running Pipelines](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts)
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* [Tutorial Packages](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/tutorials)
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* [Managing Remote Projects](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/remote-start-up)
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* [Functions](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/functions)
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* [Contributing and Contacting Us](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/contributing)
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# Tutorials and Best Practice
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There are three symbols that you should keep an eye out for in this documentation:
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* :so: These stars highlight our recommended **Best Practices**.
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* :b: The letter B indicates an **Example** based off of the BUCANL Pipeline Tutorials.
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* :warning: This warning indicates when you have to **Change a Tutorial File** if you are using one of the EEG_pipe packages
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***
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* :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change.
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# Overview
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Running a successful job using batch context consists of 5 main components:
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1. Data Files
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2. [Scripts](https://git.sharcnet.ca/jdesjard/batch_context/wikis/script-files)
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3. [Batch Configuration Files](https://git.sharcnet.ca/jdesjard/batch_context/wikis/configuration-files)
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4. [Context Configuration File](https://git.sharcnet.ca/jdesjard/batch_context/wikis/configuration-files)
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5. [Local or Remote Computing Resources ](https://git.sharcnet.ca/jdesjard/batch_context/wikis/running-scripts)
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All of these components will need to be selected or loaded into the main batch context user interface before the batch is executed. Running your data file in a batch is an effective way to execute script pipelines on large sets of data files.
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:so: Download the [Tutorial Pipeline](https://git.sharcnet.ca/jdesjard/batch_context/wikis/tutorials) and work your way through the wiki pages. If you want to get right to running a job go to [Running scripts](https://git.sharcnet.ca/jdesjard/batch_context/wikis/running-scripts) and use :b: provided files.
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## Copywrite
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Copyright (C) 2013 James Desjardins
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*This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 2 of the License, or
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(at your option) any later version.*
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*This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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GNU General Public License for more details.*
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*You should have received a copy of the GNU General Public License
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along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*
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[ :arrow_up: Top of Page](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/home)
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