Updated Home (markdown) authored by Andrew Lofts's avatar Andrew Lofts
Brief demo of interpolating a data set to locations in a coordinate file [here.](http://youtu.be/Q8qYxNvz_OQ) Brief demo of interpolating a data set to locations in a coordinate file [here.](http://youtu.be/Q8qYxNvz_OQ)
# Abstract Copyright (C) 2013 James Desjardins
The batch_context extension for EEGLAB provides and interface for generating data
processing pipelines and executing them on multiple data files either locally or This program is free software; you can redistribute it and/or modify
on remote compute clusters. This extension also provides the tools needed to manages it under the terms of the GNU General Public License as published by
remote server addresses and facilitates working with a remote environments. the Free Software Foundation; either version 2 of the License, or
*** (at your option) any later version.
*Code written by James A. Desjardins, supported by NSERC funding to Sidney J. Segalowitz This program is distributed in the hope that it will be useful,
at the Jack and Nora Walker Centre for Lifespan Development Research (Brock University), but WITHOUT ANY WARRANTY; without even the implied warranty of
and a Dedicated Programming award from SHARCNet, Compute Ontario.* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*This package includes the following external tools from the Matlab File Share: # Abstract
Property grid using JIDE implementation, by Levente Hunyadi* The Interpmont extension for EEGLAB provides tools for warping EEG.chanlocs coordinates to the surface of locations in an EEGLAB recognized coordinate file. It also provides tool for interpolating sites in a loaded dataset to sites in a coordinate file as well as rereferencing a loaded dataset to the average signal of interpolated sites in a coordinate file.
***
*System applications that work well with the Context plugin include Code written by James A. Desjardins, supported by NSERC funding to Sidney J. Segalowitz at the Brock University Cognitive and Affective Neuroscience Lab, Psychology Department
Meld 1.7 (or later), sshfs, and rsync.* Jack and Nora Walker Centre for Lifespan Development Research.
# Page Navigation # Page Navigation
* [Script Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/script-files) examples atm
* [Configuration Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files)
* [Running Pipelines](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts) * [Running Pipelines](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts)
* [Tutorial Packages](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/tutorials) * [Tutorial Packages](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/tutorials)
* [Managing Remote Projects](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/remote-start-up)
* [Functions](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/functions) * [Functions](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/functions)
* [Contributing and Contacting Us](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/contributing) * [Contributing and Contacting Us](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/contributing)
...@@ -38,17 +42,10 @@ There are three symbols that you should keep an eye out for in this documentatio ...@@ -38,17 +42,10 @@ There are three symbols that you should keep an eye out for in this documentatio
* :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change. * :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change.
# Overview # Overview
Running a successful job using batch context consists of 5 main components:
1. Data Files
2. [Scripts](https://git.sharcnet.ca/jdesjard/batch_context/wikis/script-files)
3. [Batch Configuration Files](https://git.sharcnet.ca/jdesjard/batch_context/wikis/configuration-files)
4. [Context Configuration File](https://git.sharcnet.ca/jdesjard/batch_context/wikis/configuration-files)
5. [Local or Remote Computing Resources ](https://git.sharcnet.ca/jdesjard/batch_context/wikis/running-scripts)
All of these components will need to be selected or loaded into the main batch context user interface before the batch is executed. Running your data file in a batch is an effective way to execute script pipelines on large sets of data files. text here ____-----______----____----___----___----__----___-
:so: Download the [Tutorial Pipeline](https://git.sharcnet.ca/jdesjard/batch_context/wikis/tutorials) and work your way through the wiki pages. If you want to get right to running a job go to [Running scripts](https://git.sharcnet.ca/jdesjard/batch_context/wikis/running-scripts) and use :b: provided files. :so: Download the [Tutorial Pipeline](https://git.sharcnet.ca/jdesjard/batch_context/wikis/tutorials)
![overveiwallcolor](/uploads/6d4cc7aaaef80e191998f4d27453c7b2/overveiwallcolor.png)
## Copywrite ## Copywrite
...@@ -68,7 +65,7 @@ GNU General Public License for more details.* ...@@ -68,7 +65,7 @@ GNU General Public License for more details.*
along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software along with this program (LICENSE.txt file in the root directory); if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*
[ :arrow_up: Top of Page](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/home) [ :arrow_up: Top of Page](https://git.sharcnet.ca/bucanl_eeglab_extensions/interp_mont/wikis/Home)
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