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**Tables of Contents**
[[_TOC_]]
# Abstract # Abstract
The batch_context extension for EEGLAB provides and interface for generating data The batch_context extension for EEGLAB provides and interface for generating data
processing pipelines and executing them on multiple data files either locally or processing pipelines and executing them on multiple data files either locally or
...@@ -15,19 +19,19 @@ remote server addresses and facilitates working with a remote environments. ...@@ -15,19 +19,19 @@ remote server addresses and facilitates working with a remote environments.
# Page Navigation # Page Navigation
**Batch Context Main Components** **Batch Context Main Components**
* [Script Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/script-files) * [Script Files](script-files)
* [Configuration Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files) * [Configuration Files](configuration-files)
* [Running Pipelines](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts) * [Running Pipelines](running-scripts)
**Batch Context Design** **Batch Context Design**
* [Functions](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/functions) * [Functions](functions)
**Reference and Help** **Reference and Help**
* [Operating Systems and Remote Submissions](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/operating-systems) * [Operating Systems and Remote Submissions](operating-systems)
* [Tutorial Packages](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/tutorials) * [Tutorial Packages](tutorials)
* [Managing Remote Projects](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/remote-start-up) * [Managing Remote Projects](remote-start-up)
* [Adv. String Swapping Techniques](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/adv-str-swap) * [Adv. String Swapping Techniques](adv-str-swap)
* [Contributing and Contacting Us](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/contributing) * [Contributing and Contacting Us](contributing)
# Tutorials and Best Practice # Tutorials and Best Practice
There are three symbols that you should keep an eye out for in this documentation: There are three symbols that you should keep an eye out for in this documentation:
...@@ -42,14 +46,14 @@ There are three symbols that you should keep an eye out for in this documentatio ...@@ -42,14 +46,14 @@ There are three symbols that you should keep an eye out for in this documentatio
# Getting Started! # Getting Started!
Running a successful job using batch context consists of 5 main components: Running a successful job using batch context consists of 5 main components:
1. Data Files 1. Data Files
2. [History Batch Files (Scripts)](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/script-files) 2. [History Batch Files (Scripts)](script-files)
3. [Batch Configuration Files](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files) 3. [Batch Configuration Files](configuration-files)
4. [Context Configuration File](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/configuration-files) 4. [Context Configuration File](configuration-files)
5. [Local or Remote Computing Resources ](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts) 5. [Local or Remote Computing Resources ](running-scripts)
All of these components will need to be selected and/or loaded into the main batch context user interface before the batch can be executed. Running your data files in a batch is an effective way to execute scripted pipelines, modules or procedures on large sets of data files. All of these components will need to be selected and/or loaded into the main batch context user interface before the batch can be executed. Running your data files in a batch is an effective way to execute scripted pipelines, modules or procedures on large sets of data files.
:so: Download the [Tutorial Pipeline](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/tutorials) and work your way through the wiki pages. If you want to get right to running a job go to [Running scripts](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/running-scripts) and use :b: provided files. :so: Download the [Tutorial Pipeline](tutorials) and work your way through the wiki pages. If you want to get right to running a job go to [Running scripts](running-scripts) and use :b: provided files.
![overveiwallcolor](/uploads/6d4cc7aaaef80e191998f4d27453c7b2/overveiwallcolor.png) ![overveiwallcolor](/uploads/6d4cc7aaaef80e191998f4d27453c7b2/overveiwallcolor.png)
...@@ -85,4 +89,4 @@ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA* ...@@ -85,4 +89,4 @@ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA*
*Updated/Verified by Brad Kennedy on 2017-08-01* *Updated/Verified by Brad Kennedy on 2017-08-01*
[ :arrow_up: Top of Page](https://git.sharcnet.ca/bucanl_eeglab_extensions/batch_context/wikis/home) [ :arrow_up: Top of Page](home)
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