... | ... | @@ -16,8 +16,20 @@ remote server addresses and facilitates working with a remote environments. |
|
|
* Submit jobs with dynamic resource parameters that optimize resource allocation leading to lower queue times in competitive resource allocations.
|
|
|
* Provides simple front end to researchers to code written by programmers to submit data files to be processed in parallel
|
|
|
* Share and save configurations that are submitted with each job
|
|
|
|
|
|
## Tutorial
|
|
|
If you wish to make your own pipeline we suggest you use the tutorial below as guidance. The [bucanl ICA pipeline](https://git.sharcnet.ca/bucanl_pipelines/eeg_pipe_asr_amica) is a practical examples but is very complex and may be hard to understand due to complex interactions.
|
|
|
|
|
|
# Page Navigation
|
|
|
**Tutorial Steps**
|
|
|
* [Requirements](tutorial-requirements)
|
|
|
* [Install EEGLAB](tutorial-eeglab)
|
|
|
* [Creating HTB Files](tutorial-creating-htb-files)
|
|
|
* [Creating Configuration Files](tutorial-creating-config-files)
|
|
|
* [Creating a Context Configuration File](tutorial-creating-a-context-configuration-file)
|
|
|
* [Running your job locally](tutorial-running-locally)
|
|
|
* [Running your job remotely](tutorial-running-remotely)
|
|
|
|
|
|
**Batch Context Main Components**
|
|
|
* [Script Files](script-files)
|
|
|
* [Configuration Files](configuration-files)
|
... | ... | @@ -27,12 +39,6 @@ remote server addresses and facilitates working with a remote environments. |
|
|
* [Adv. String Swapping Techniques](adv-str-swap)
|
|
|
* [Contributing and Contacting Us](contributing)
|
|
|
|
|
|
# Tutorials and Best Practice
|
|
|
There are three symbols that you should keep an eye out for in this documentation:
|
|
|
* :so: These stars highlight our recommended **Best Practices**.
|
|
|
* :b: The letter B indicates an **Example** based off of the BUCANL Pipeline Tutorials.
|
|
|
* :warning: This warning indicates when you have to **Change a Tutorial File** if you are using one of the EEG_pipe packages
|
|
|
|
|
|
***
|
|
|
|
|
|
* :floppy_disk: Please note that whenever you make a change to a GUI(Graphic User Interface) field box, you must click off of it so that the field box is **not** highlighted, for EEGLAB to record your change.
|
... | ... | @@ -46,10 +52,6 @@ Running a successful job using batch context consists of 5 main components: |
|
|
|
|
|
All of these components will need to be selected and/or loaded into the main batch context user interface before the batch can be executed. Running your data files in a batch is an effective way to execute scripted pipelines, modules or procedures on large sets of data files.
|
|
|
|
|
|
:so: Download the [Tutorial Pipeline](tutorials) and work your way through the wiki pages. If you want to get right to running a job go to [Running scripts](running-scripts) and use :b: provided files.
|
|
|

|
|
|
|
|
|
|
|
|
## Attribution
|
|
|
|
|
|
*Code written by James A. Desjardins, Allan Campopiano, Andrew Lofts, Mike Cichonski, and Brad Kennedy,
|
... | ... | |